orthGS (version 0.1.6)

orthG: Infer GS OrthoGroups Within a Set of Species

Description

Infers GS orthogroups using tree reconciliation

Usage

orthG(set = "all")

Value

A list with two elements. The first one is the adjacency matrix (1 for orthologous, 0 for paralogous). The second element is an orthogroup graph.

Arguments

set

set of species of interest provided as a character vector either with the binomial or short code of the species (see data(sdf)).

Details

When set = "all", all the species in the database will be included.

Examples

orthG(set = c("Pp", "Psy", "Psm", "Ap"))