Learn R Programming

orthGS (version 0.1.6)

orthP: Search Orthologous of a Given Protein

Description

Searchs orthologous of a given protein within a set of selected species

Usage

orthP(phylo_id, set = "all")

Value

A list with thee elements: 1. subtree of the relevant proteins; 2. vector color; 3. phylo_ids of the orthologous found.

Arguments

phylo_id

phylo_id of the query protein

set

set of species of interest provided as a character vector, either with the binomial or short code of the species (see details).

Details

When set = "all", the search will be carry out against all the species in the database.

Examples

Run this code
orthP(phylo_id = "Pp_GS1a", set = c("Pp", "Psy", "Psm", "Ap"))

Run the code above in your browser using DataLab