getVar.osmose

Object of <code>osmose</code> class (see the <code><a rd-options="" href="/link/read_osmose?package=osmose&version=0.1.1" data-mini-rdoc="osmose::read_osmose">read_osmose</a></code> function).

object

Name of variable to extract. It could be: "biomass","abundance",
"yield", "yieldN".

Type of the variable to extract. By default is <code>type = "global"</code>.

type

A logical parameter. <code>TRUE</code> if the average over the 
last dimensions should be performed if the output is an array. By default is 
<code>expected = FALSE</code>.

expected

Additional arguments of the function.

Get a variable from an <code>osmose</code> object.

The multispecies and individual-based model (IBM) 'OSMOSE'
(Shin and Curry (2001) <doi:10.1016/S0990-7440(01)01106-8> and Shin and Curry (2004) <doi:10.1139/f03-154>)
focuses on fish species. This model assumes opportunistic predation based on spatial co-occurrence and size
adequacy between a predator and its prey (size-based opportunistic predation). It
represents fish individuals grouped into schools, which are characterized by their
size, weight, age, taxonomy and geographical location (2D model), and which undergo
major processes of fish life cycle (growth, explicit predation, natural and starvation
mortalities, reproduction and migration) and fishing exploitation. The model needs
basic biological parameters that are often available for a wide range of species, and
which can be found in 'FishBase' for instance (see <http://www.fishbase.org/search.php>), and fish spatial distribution data. This
package provides tools to build and run simulations using the 'OSMOSE' model.

Nicolas Barrier

osmose

Object Oriented Simulator of Marine Ecosystems

Yunne-Jai Shin

Travers Morgane

Verley Philippe

Ricardo Oliveros-Ramos

Laure Velez

Criscely Lujan

Michael Hurtado

getVar.osmose function

Object of <code>osmose</code> class (see the <code><a rd-options='' href='read_osmose'>read_osmose</a></code> function).

getVar.osmose: GetVar method for osmose objects

Description

Usage

Arguments

Value