configureCalibration

osmose.config object (see <code><a rd-options="" href="/link/readOsmoseConfiguration?package=osmose&version=3.3.4" data-mini-rdoc="osmose::readOsmoseConfiguration">readOsmoseConfiguration</a></code>)

The configuration argument must contain a "calibration" entry to work.

The multispecies and individual-based model (IBM) 'OSMOSE'
(Shin and Curry (2001) <doi:10.1016/S0990-7440(01)01106-8> and Shin and Curry
(2004) <doi:10.1139/f03-154>) focuses on fish species. This model assumes
opportunistic predation based on spatial co-occurrence and size adequacy
between a predator and its prey (size-based opportunistic predation). It
represents fish individuals grouped into schools, which are characterized by
their size, weight, age, taxonomy and geographical location (2D model), and
which undergo major processes of fish life cycle (growth, explicit predation,
natural and starvation mortalities, reproduction and migration) and fishing
exploitation. The model needs basic biological parameters that are often
available for a wide range of species, and which can be found in 'FishBase'
for instance (see <http://www.fishbase.org/search.php>), and fish spatial
distribution data. This package provides tools to build and run simulations
using the 'OSMOSE' model.

Nicolas Barrier

osmose

Object Oriented Simulator of Marine Ecosystems

Yunne-Jai Shin

Travers Morgane

Verley Philippe

Ricardo Oliveros-Ramos

Laure Velez

Criscely Lujan

Michael Hurtado

Wencheng Lau-Medrano

configureCalibration function

osmose.config object (see <code><a rd-options='' href='readOsmoseConfiguration'>readOsmoseConfiguration</a></code>)

configureCalibration: Reads calibration parameters from an osmose.config list.

Description

Usage

Arguments

Value