get_var.osmose

Object of <code>osmose</code> class (see the <code><a rd-options="" href="/link/read_osmose?package=osmose&version=3.3.4" data-mini-rdoc="osmose::read_osmose">read_osmose</a></code> 
function).

object

Name of variable to extract. See Details.

what

How to return the object. Current options are "matrix" and "list".

A logical parameter. If <code>TRUE</code>, the average over the 
last dimensions will be performed (only if the output is an array).

expected

Additional arguments of the function.

Get a variable from an <code>osmose</code> object.

The multispecies and individual-based model (IBM) 'OSMOSE'
(Shin and Curry (2001) <doi:10.1016/S0990-7440(01)01106-8> and Shin and Curry
(2004) <doi:10.1139/f03-154>) focuses on fish species. This model assumes
opportunistic predation based on spatial co-occurrence and size adequacy
between a predator and its prey (size-based opportunistic predation). It
represents fish individuals grouped into schools, which are characterized by
their size, weight, age, taxonomy and geographical location (2D model), and
which undergo major processes of fish life cycle (growth, explicit predation,
natural and starvation mortalities, reproduction and migration) and fishing
exploitation. The model needs basic biological parameters that are often
available for a wide range of species, and which can be found in 'FishBase'
for instance (see <http://www.fishbase.org/search.php>), and fish spatial
distribution data. This package provides tools to build and run simulations
using the 'OSMOSE' model.

Nicolas Barrier

osmose

Object Oriented Simulator of Marine Ecosystems

Yunne-Jai Shin

Travers Morgane

Verley Philippe

Ricardo Oliveros-Ramos

Laure Velez

Criscely Lujan

Michael Hurtado

Wencheng Lau-Medrano

get_var.osmose function

Object of <code>osmose</code> class (see the <code><a rd-options='' href='read_osmose'>read_osmose</a></code> 
function).

get_var.osmose: get_var method for osmose outputs objects

Description

Usage

Arguments

Value

Details