write.osmose

write_osmose

Object to be written (table or data frame)

file

The field separator string. Values within each row of x are 
separated by this string.

either a logical value indicating whether the column names 
of x are to be written along with x, or a character vector of column names to 
be written. See the section on &lt;U+2018&gt;CSV files&lt;U+2019&gt; for the meaning of 
<code>col.names = NA</code>.

col.names

A <code>logical</code> value (<code>TRUE</code> or <code>FALSE</code>) or a 
<code>numeric</code> vector.

quote

either a logical value indicating whether the row names of x 
are to be written along with x, or a character vector of row names to be 
written.

row.names

Extra arguments passed to <code>write.table</code> funtion.

Write an array or dataframe in the Osmose format.
The separator is ";", there are no quotes and a blank column is
added for the row names column.

The multispecies and individual-based model (IBM) 'OSMOSE'
(Shin and Curry (2001) <doi:10.1016/S0990-7440(01)01106-8> and Shin and Curry
(2004) <doi:10.1139/f03-154>) focuses on fish species. This model assumes
opportunistic predation based on spatial co-occurrence and size adequacy
between a predator and its prey (size-based opportunistic predation). It
represents fish individuals grouped into schools, which are characterized by
their size, weight, age, taxonomy and geographical location (2D model), and
which undergo major processes of fish life cycle (growth, explicit predation,
natural and starvation mortalities, reproduction and migration) and fishing
exploitation. The model needs basic biological parameters that are often
available for a wide range of species, and which can be found in 'FishBase'
for instance (see <http://www.fishbase.org/search.php>), and fish spatial
distribution data. This package provides tools to build and run simulations
using the 'OSMOSE' model.

write.osmose: Write data in osmose format

Description

Usage

Arguments