otargen (version 1.1.5)

topOverlappedStudies: Retrieve top studies having overlap in identified loci.

Description

For a provided study ID, the function, retrieves top studies with overlap in their identified loci with the queried study loci.

Usage

topOverlappedStudies(study_id, pageindex = 0, pagesize = 20)

Value

Returns a data frame with the top studies containing the following columns:

• study.studyId: Character. Study ID of the input study.

• study.traitReported: Character. Reported trait of the input study.

• study.traitCategory: Character. Category of the trait in the input study.

• topStudiesByLociOverlap.studyId: Character. Study ID of the top associated studies.

• topStudiesByLociOverlap.study.studyId: Character. Study ID of the top associated studies.

• topStudiesByLociOverlap.study.traitReported: Character. Reported trait of the top associated studies.

• topStudiesByLociOverlap.study.traitCategory: Character. Category of the trait in the top associated studies.

• topStudiesByLociOverlap.numOverlapLoci: Integer. Number of loci overlapped with the input study.

Arguments

study_id

Character: Open Targets Genetics generated ID for a GWAS study.

pageindex

Integer: Index of the current page for pagination (>= 0).

pagesize

Integer: Number of records in a page for pagination (> 0).

Examples

if (FALSE) {
result <- topOverlappedStudies(study_id = "GCST006614_3")
result <- topOverlappedStudies(study_id = "NEALE2_6177_1", pageindex = 1, pagesize = 50)
}