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Unified Access to Open Targets Platform Data

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Version

Install

install.packages('otargen')

Monthly Downloads

172

Version

2.0.0

License

MIT + file LICENSE

Maintainer

Amir Feizi

Last Published

July 15th, 2025

Functions in otargen (2.0.0)

gwasColocalisation

Retrieve calculated GWAS colocalisation data
gwasCredibleSet

Retrieve GWAS credible set data
indicationsQuery

Retrieve Indications data for a specified drug.
sharedTraitStudiesQuery

Retrieve Shared Trait Studies data for specified diseases.
safetyQuery

Retrieve Safety Liabilities data for a specified gene.
variantsQuery

Retrieve Variants data for a specified study locus.
pharmacogenomicsVariantQuery

Retrieve Pharmacogenomics data for a specified variant.
interactionsQuery

Retrieve Interactions data for a specified gene.
qtlCredibleSetsQuery

Retrieve QTL Credible Sets data for a specified variant.
pharmacogenomicsGeneQuery

Retrieve Pharmacogenomics data for a specified gene.
pharmacogenomicsChemblQuery

Retrieve Pharmacogenomics data for a specified drug.
uniProtVariantsQuery

Retrieve UniProt Variants data for a specified variant.
uniprotLiteratureQuery

Retrieve UniProt Literature data for a specified gene and disease.
mousePhenotypesQuery

Retrieve Mouse Phenotypes data for a specified gene.
orphanetQuery

Retrieve Orphanet data for a specified gene and disease.
variantEffectPredictorQuery

Retrieve Variant Effect Predictor data for a specified variant.
overlapInfoForStudy

Retrieves overlap info for a study and a list of studies
pathwaysQuery

Retrieve Pathways data for a specified gene.
variantEffectQuery

Retrieve Variant Effect data for a specified variant.
europePMCQuery

Retrieve Europe PMC data for a specified gene and disease.
genomicsEnglandQuery

Retrieve Genomics England data for a specified gene and disease.
compGenomicsQuery

Retrieve Comparative Genomics data for a specified gene.
geneBurdenQuery

Retrieve Gene Burden data for a specified gene and disease.
geneOntologyQuery

Retrieve Gene Ontology data for a specified gene.
depMapQuery

Retrieve DepMap Essentiality data for a specified gene.
geneticConstraintQuery

Retrieve Genetic Constraint data for a specified gene.
clinVarQuery

Retrieve ClinVar data for a specified gene and disease.
chemblQuery

Retrieve ChEMBL data for a specified gene and disease.
adverseEventsQuery

Retrieve Adverse Events data for a specified drug.
locus2GeneQuery

Retrieve Locus-to-Gene Predictions data for a specified study locus.
mechanismsOfActionQuery

Retrieve Mechanisms of Action data for a specified drug.
gwasCredibleSetsQuery

Retrieve GWAS Credible Sets data for a specified target and disease.
hallmarksQuery

Retrieve Cancer Hallmarks data for a specified gene.
knownDrugsChemblQuery

Retrieve Known Drugs data for a specified drug.
knownDrugsGeneQuery

Retrieve Known Drugs data for a specified gene.