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ouxy (version 2.1)

Model of Adaptive Trait Evolution

Description

Performs statistical inference on the models of adaptive trait evolution under approximate Bayesian computation. This can simulate traits from four models, compute trait data summary statistics. Parameters are estimated under Approximate Bayesian Computation, model selection as well as posterior parameter mean will be reported. Users need to enter a comparative dataset and a phylogenetic tree.

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Version

Install

install.packages('ouxy')

Monthly Downloads

14

Version

2.1

License

GPL (>= 2)

Maintainer

Dwueng-Chwuan Jhwueng

Last Published

May 28th, 2020

Functions in ouxy (2.1)

oubmbmmodel

Simulate traits under OUBMBM model given a set of parameters
oubmcirprior

Draw prior samples for OUBMCIR model
ouqoumodel

Simulate traits under ouqou model given a set of parameters
ouqbmTrait

Parameter samples and summary statistics
oubmcirmodel

Simulate traits under OUBMCIR model given a set of parameters
ouqouTrait

Parameter samples and summary statistics
oubmmodel

Simulate traits under OUBM model given a set of parameters
ououprior

Draw prior samples for OUOU model
ououTrait

Parameter samples and summary statistics
oubmprior

Draw prior samples for OUBM model
ououbmTrait

Parameter samples and summary statistics
ougbmTrait

Parameter samples and summary statistics
ougoumodel

Simulate traits under ougou model given a set of parameters
ougbmmodel

Simulate traits under ougbm model given a set of parameters
ougbmprior

Draw prior samples for ougbm model
ougouprior

Draw prior samples for ougou model
ououcirmodel

Simulate traits under OUBMCIR model given a set of parameters
ouqbmprior

Draw prior samples for ouqbm model
ouqbmmodel

Simulate traits under ouqbm model given a set of parameters
ououcirTrait

Parameter samples and summary statistics
sumstat

Summary statistics
regboundfcn

range for regression parameters
ououmodel

Simulate traits under OUOU model given a set of parameters
ououcirprior

Draw prior samples for OUOUCIR model
ougouTrait

Parameter samples and summary statistics
ououbmmodel

Simulate traits under OUOUBM model given a set of parameters
ououbmprior

Draw prior samples for OUOUBM model
ouqouprior

Draw prior samples for ouqou model
ouxy

main program to perform analysis
oubmbmprior

Draw prior samples for OUBMBM model
coral

Coral datset
OUprior

Fit OU model for univariate data
HyperParam

The range of parameters
oubmcirTrait

Parameter samples and summary statistics
oubmTrait

Parameter samples and summary statistics
oubmbmTrait

Parameter samples and summary statistics
bat

Bat datset
lizard

Lizard datset