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pAnalysis (version 1.0)

Benchmarking and Rescaling R2 using Noise Percentile Analysis

Description

Provides the tools needed to benchmark the R2 value corresponding to a certain acceptable noise level while also providing a rescaling function based on that noise level yielding a new value of R2 we refer to as R2k which is independent of both the number of degrees of freedom and the noise distribution function.

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Version

Install

install.packages('pAnalysis')

Monthly Downloads

213

Version

1.0

License

GPL-2

Maintainer

Joseph G Kreke

Last Published

November 18th, 2015

Functions in pAnalysis (1.0)

R2

R-squared
R2p

Calculation of baseline noise level (R2p) at a single value of degrees of freedom (dof)
plotR2Equiv

Plotting Equivalent R2s across a range of degrees of freedom.
R2pTable

Creates a table R2p values for combinations of degrees of freedom and percentiles
plotpdf

Plot Several Probability Density Functions
pAnalysis-package

pAnalysis
plotcdf

Plot several Cumulative Density Functions
pcdfs

R2 values with corresponding probability density and cumulative density functions.
R2k

Conversion of standard R2 to a noise/dof-independent value
plotR2k

Plot R2k for a single measured R2 and a single noise percentile across a range of degrees of freedom
cap1

cap1
plotR2p

Plot several noise baselines (R2p)