pGRNDB

<p>A list with expression dataframe and pseudotime dataframe</p>

datasets

Inference and visualize gene regulatory network based on single-cell RNA sequencing pseudo-time information.

Gangcai Xie

pGRN

Single-Cell RNA Sequencing Pseudo-Time Based Gene Regulatory
Network Inference

pGRNDB function


<div class="section" id="pgrndb">
<h3><code>pGRNDB</code></h3><p></p><p>
</p><p>A list with items expression and ptime</p><dl>
<dt>expression</dt>
<dd><p>data frame of single cell expression</p></dd><p></p><p><dt>ptime</dt>
<dd><p>pseudotime of the single cells</p></dd></p><p>...</p><p></p></dl><p></p><p></p></div>


Format

pGRN example data — pGRNDB


<div class='section' id='pgrndb'>
<h3><code>pGRNDB</code></h3>


<p>A list with items expression and ptime</p><dl>
<dt>expression</dt>
<dd><p>data frame of single cell expression</p></dd>

<dt>ptime</dt>
<dd><p>pseudotime of the single cells</p></dd>

...

</dl>

</div>


pGRNDB: pGRN example data

Description

Usage

Arguments

Format

`pGRNDB`