pKSEA (version 0.0.1)

getscores: Sum score contributions for each kinase across all phosphopeptides

Description

Sum score contributions for each kinase across all phosphopeptides

Usage

getscores(matched_data)

Arguments

matched_data

Input with calculated contributions

Value

A dataframe with each kinase as a row and raw kinase activity change score (KAC) calculated

Examples

# NOT RUN {
#Read in example summary statistics dataset from csv
summarydata_ex <- read.csv(system.file("extdata", "example_data1.csv", package="pKSEA"))

#Get matched data using predictions from NetworKIN
matched_data_ex <- get_matched_data(summarydata_ex, NetworKINPred_db)

#Calculate contributions
calc_ex <- calc_contribution(matched_data_ex)

#Calculate kinase activity change scores
kac_ex <- getscores(calc_ex)

# }