Learn R Programming
⚠️There's a newer version (1.1) of this package.Take me there.

pSI (version 1.0)

Specific Index Statistic

Description

This package contains functions to calculate the Specificity Index statistic, which can be used for comparative quantitative analysis to identify genes enriched in specific cell populations across a large number of profiles, as well as perform numerous post-processing operations

Copy Link

Version

Install

install.packages('pSI')

Monthly Downloads

4

Version

1.0

License

GPL (>= 2)

Maintainer

Alan Wells

Last Published

January 10th, 2014

Functions in pSI (1.0)

pSI-package

Specific Index Statistic
pSI.list

Convert pSI output to gene list
dataset.s1

Supplementary Data Set 1
fisher.iteration

Fisher's Exact Test Across All Cell Types & pSI Thresholds
specificity.index

Specificity Index Statistic
sample.data

Sample Input & Output pSI Data Sets
pSI.count

Convert pSI output to gene count list
candidate.genes

Candidate Gene Lists
candidate.overlap

Candidate Gene Overlap