candidate.overlap
Extracts genes specific to samples
which overlap with a candidate gene list at various pSI
thresholds
candidate.overlap(pSIs, candidate.genes, write.csv = FALSE)
specificity.index
function with the number of
columns equal to the number of samples and genes as
rows.pSI.data
package located at the following URL:
http://genetics.wustl.edu/jdlab/psi_package/
##load sample pSI output
data(sample.data)
##load sample candidate gene lists
data(candidate.genes)
##Generates lists of overlapping genes
candidate.gene.overlap.AutDB <- candidate.overlap(pSIs=sample.data$pSI.output,
candidate.genes=candidate.genes$AutDB)
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