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paco (version 0.2.1)
Procrustes Application to Cophylogenetic Analysis
Description
Procrustes analyses to infer co-phylogenetic matching between pairs of (ultrametric) phylogenetic trees.
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Install
install.packages('paco')
Monthly Downloads
270
Version
0.2.1
License
MIT + file LICENSE
Maintainer
Timothee Poisot
Last Published
July 18th, 2015
Functions in paco (0.2.1)
Search functions
paco_links
Contribution of individual links
prepare_paco_data
Prepare the data Simple wrapper to make sure that the matrices are sorted accordingly
gophertree
Gopher phylogeny
coordpcoa
Internal fucntion of add_pcoord performing pricipal coordinate analysis
add_pcoord
Principle coordinate analysis of phylogenies
gl_links
Gopher/lice phylogenies
licetree
Lice phylogeny
residuals.paco
Get procrustes residuals from a paco object
PACo
Performs PACo/procustes analysis