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paco (version 0.2.2)

Procrustes Application to Cophylogenetic Analysis

Description

Procrustes analyses to infer co-phylogenetic matching between pairs of (ultrametric) phylogenetic trees.

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Version

Install

install.packages('paco')

Monthly Downloads

240

Version

0.2.2

License

MIT + file LICENSE

Maintainer

Timothee Poisot

Last Published

October 9th, 2015

Functions in paco (0.2.2)

gophertree

Gopher phylogeny
coordpcoa

Internal fucntion of add_pcoord performing pricipal coordinate analysis
add_pcoord

Principle coordinate analysis of phylogenies
licetree

Lice phylogeny
gl_links

Gopher/lice phylogenies
PACo

Performs PACo/procustes analysis
paco_links

Contribution of individual links
prepare_paco_data

Prepare the data Simple wrapper to make sure that the matrices are sorted accordingly
residuals.paco

Get procrustes residuals from a paco object