paco (version 0.2.3)

prepare_paco_data: Prepare the data Simple wrapper to make sure that the matrices are sorted accordingly

Description

Prepare the data Simple wrapper to make sure that the matrices are sorted accordingly

Usage

prepare_paco_data(H, P, HP)

Arguments

H

Host distance matrix

P

Parasite distance matrix

HP

Host-parasite association matrix, hosts in rows

Value

A list with objects H, P, HP

Examples

data(gopherlice)
library(ape)
gdist <- cophenetic(gophertree)
ldist <- cophenetic(licetree)
D <- prepare_paco_data(gdist, ldist, gl_links)