reefs

A dataset of Phanerozoic reef occurrences from the
<a href="https://www.paleo-reefs.pal.uni-erlangen.de">PaleoReefs Database</a> (PARED).
This example dataset includes a subset of the available data from PARED,
but can be used to demonstrate how the functions in the <code>palaeoverse</code>
package might be applied.

datasets

Provides functionality to support data preparation and exploration for
palaeobiological analyses, improving code reproducibility and accessibility. The
wider aim of 'palaeoverse' is to bring the palaeobiological community together
to establish agreed standards. The package currently includes functionality for
data cleaning, binning (time and space), exploration, summarisation and
visualisation. Reference datasets (i.e. Geological Time Scales <https://stratigraphy.org/chart>)
and auxiliary functions are also provided. Details can be found in:
Jones et al., (2023) <doi: 10.1111/2041-210X.14099>.

Lewis A. Jones

palaeoverse

Prepare and Explore Data for Palaeobiological Analyses

William Gearty

Bethany J. Allen

Kilian Eichenseer

Christopher D. Dean

Sofia Galvan

Miranta Kouvari

Pedro L. Godoy

Cecily Nicholl

Lucas Buffan

Erin M. Dillon

Joseph T. Flannery-Sutherland

A. Alessandro Chiarenza

reefs function

A data frame with 4363 rows and 14 variables:<dl>
<dt>r_number</dt>
<dd>Reference number given to the particular fossil
reef in PARED</dd><dt>name</dt>
<dd>Reference name given to the particular fossil
reef in PARED</dd><dt>formation</dt>
<dd>The geological formation to which the fossil
reef belongs</dd><dt>system</dt>
<dd>The stratigraphic system to which the fossil
reef belongs</dd><dt>series</dt>
<dd>The stratigraphic series to which the fossil
reef belongs</dd><dt>interval</dt>
<dd>The stratigraphic interval to which the fossil
reef belongs</dd><dt>biota_main</dt>
<dd>The main biota present within the fossil
reef</dd><dt>biota_sec</dt>
<dd>The secondary biota present within the fossil
reef</dd><dt>lng</dt>
<dd>The modern-day longitude of the fossil reef</dd><dt>lat</dt>
<dd>The modern-day latitude of the fossil reef</dd><dt>country</dt>
<dd>The country or ocean the fossil reef is located in</dd><dt>authors</dt>
<dd>The authors of the publication documenting the fossil reef</dd><dt>title</dt>
<dd>The title of the publication documenting the fossil reef</dd><dt>year</dt>
<dd>The year of the publication documenting the fossil reef</dd>
</dl>

Format

A dataset of Phanerozoic reef occurrences from the
<a href='https://www.paleo-reefs.pal.uni-erlangen.de'>PaleoReefs Database</a> (PARED).
This example dataset includes a subset of the available data from PARED,
but can be used to demonstrate how the functions in the <code>palaeoverse</code>
package might be applied.

Example dataset: Phanerozoic reefs from the PaleoReefs Database — reefs

A data frame with 4363 rows and 14 variables:<dl>
<dt>r_number</dt>
<dd>Reference number given to the particular fossil
reef in PARED</dd>

<dt>name</dt>
<dd>Reference name given to the particular fossil
reef in PARED</dd>

<dt>formation</dt>
<dd>The geological formation to which the fossil
reef belongs</dd>

<dt>system</dt>
<dd>The stratigraphic system to which the fossil
reef belongs</dd>

<dt>series</dt>
<dd>The stratigraphic series to which the fossil
reef belongs</dd>

<dt>interval</dt>
<dd>The stratigraphic interval to which the fossil
reef belongs</dd>

<dt>biota_main</dt>
<dd>The main biota present within the fossil
reef</dd>

<dt>biota_sec</dt>
<dd>The secondary biota present within the fossil
reef</dd>

<dt>lng</dt>
<dd>The modern-day longitude of the fossil reef</dd>

<dt>lat</dt>
<dd>The modern-day latitude of the fossil reef</dd>

<dt>country</dt>
<dd>The country or ocean the fossil reef is located in</dd>

<dt>authors</dt>
<dd>The authors of the publication documenting the fossil reef</dd>

<dt>title</dt>
<dd>The title of the publication documenting the fossil reef</dd>

<dt>year</dt>
<dd>The year of the publication documenting the fossil reef</dd>


</dl>

Example dataset: Phanerozoic reefs from the PaleoReefs Database

reefs: Example dataset: Phanerozoic reefs from the PaleoReefs Database

Description

Usage

Arguments

Format

References