paleofire (version 1.1.8)

plot.pfCompositeLF: plot.pfCompositeLF

Description

Plot pfCompositeLF object

Usage

"plot"(x, type = "ci", add = "NULL", conf = c(0.05, 0.95), palette = "jet", xlim = NULL, ylim = NULL, main = "Composite", text = FALSE, what = "locfit", ...)

Arguments

x

A "pfCompositeLF" object.

type

Character, type of plot among "ci", "prctile", "density"

add

Character, add=NULL by default, add="sitenum" could be specified to plot the sites number in eah bin along with the composite curve.

conf

Numeric, confidence levels.

palette

Character, color palette used with type=c("prctile", "density") among "jet" and "BW".

xlim

Numeric, x axis limits.

ylim

Numeric, y axis limits.

main

Character, title of the plot.

text

Logical, text options.

what

Character, indicates which transformed charcoal trend is used for the plot (type="ci"), default "locfit" indicates that the trend is the locfit applied to All binned data, use "mean" or "median" to plot the mean or median of the locfit relplicates given by the bootstrap procedure.

...

...

Examples

ID=pfSiteSel(id_region=="WNA0",l12==1,long>=-160,long<=-140)

TR=pfTransform(ID, method=c("MinMax","Box-Cox","MinMax","Z-Score"),
               BasePeriod=c(200,2000),QuantType="INFL")

COMP1=pfCompositeLF(TR, tarAge=seq(-50,4000,10), hw=200, nboot=100)

plot(COMP1)

## Note: comparing confidence intervals based on 100 replicates is not recommended
# (100 is used to decrease analysis time)