Extrapolating Lower-Level Taxon Phylogenies from Higher-Level Taxon Trees
Diversity Curves
Cladogram and Range Data for the Retiolitinae
Convert Simulated Taxon Data into a Phylogeny
Modify or Drop Terminal Branches of Various Types
Split Tip Taxa by Root Divergence
Reverse List Structure
Timescaling of Paleo-Phylogenies
Simulate Cladogenetic Trait Evolution
Calculates Values for Foote's Inverse Survivorship Analyses
Paint Tree Branch Depth by Color
Joint Probability of A Clade Surviving Infinitely or Being Sampled Once
Probability of being a sampled ancestor of another sampled taxon
Bin Simulated Temporal Ranges in Discrete Intervals
Frequency Ratio Method for Estimating Sampling Probability
Simulating Un-Conditioned Trees of Fossil Taxa
Convert Simulated Taxon Data into a Cladogram
perCapitaRates
Fit Models of Sampling Probability to Discrete-Interval Taxon Ranges
paleotree: Paleontological and Phylogenetic Analyses of Evolution
Three Rate Calibrated Timescaling of Paleo-Phylogenies
Estimate Sampling Rate from Sampling Horizon Data (Solow and Smith, 1997)
Converting Sampling Estimates
Calculating Diversity Curves Across Multiple Datasets
Randomly Collapse a Portion of Nodes on a Phylogeny
Models of Sampling and Extinction for Taxonomic Duration Datasets
Simplified Optimizer for paleotree Likelihood Functions
Simulating Taxa in the Fossil Record
Scale Tree to Unit-Length
Simulating Extinct Clades of Monophyletic Taxa
Constrain Parameters for a Model Function from paleotree
Sampling Taxon Ranges
Simulating Taxa in the Fossil Record, Conditioned on Sampling Rate
Model Function Methods: Parameter Names, Bounds and Initial Values
Fit Models of Sampling Rates to Continuous-Time Taxon Ranges
Resolve Polytomies by Order of First Appearance
Plot a Traitgram for Continuous Traits
Partitions the branch lengths of a tree into several classes based on their placement.
Comparing the Time-Scaling of Trees
Time-Slicing a Phylogeny