Constrain Parameters for a Model Function from paleotree
Simplified Optimizer for paleotree Likelihood Functions
Convert Simulated Taxon Data into a Cladogram
Model Function Methods: Parameter Names, Bounds and Initial Values
Converting Sampling Estimates
Extrapolating Lower-Level Taxon Phylogenies from Higher-Level Taxon Trees
Partitions the branch lengths of a tree into several classes based on their placement.
Estimate Sampling Rate from Sampling Horizon Data (Solow and Smith, 1997)
Frequency Ratio Method for Estimating Sampling Probability
Three Rate Calibrated Timescaling of Paleo-Phylogenies
Diversity Curves
Paint Tree Branch Depth by Color
Inverse Survivorship Models in the Fossil Record
Reverse List Structure
Resolve Polytomies by Order of First Appearance
Convert Simulated Taxon Data into a Phylogeny
Time-Slicing a Phylogeny
Modify or Drop Terminal Branches of Various Types
Simulating Taxa in the Fossil Record
Models of Sampling and Extinction for Taxonomic Duration Datasets
Plot a Traitgram for Continuous Traits
Randomly Collapse a Portion of Nodes on a Phylogeny
Comparing the Time-Scaling of Trees
paleotree: Paleontological and Phylogenetic Analyses of Evolution
Probability of being a sampled ancestor of another sampled taxon
Calculates Values for Foote's Inverse Survivorship Analyses
Calculating Diversity Curves Across Multiple Datasets
Joint Probability of A Clade Surviving Infinitely or Being Sampled Once
perCapitaRates
Timescaling of Paleo-Phylogenies
Sampling Taxon Ranges
Split Tip Taxa by Root Divergence
Bin Simulated Temporal Ranges in Discrete Intervals
Simulating Un-Conditioned Trees of Fossil Taxa
Simulating Extinct Clades of Monophyletic Taxa
Simulate Cladogenetic Trait Evolution
Fit Models of Sampling Probability to Discrete-Interval Taxon Ranges
Cladogram and Range Data for the Retiolitinae
Absolute Dates for Nodes of a Time-Scaled Phylogeny
Fit Models of Sampling Rates to Continuous-Time Taxon Ranges
Simulating Taxa in the Fossil Record, Conditioned on Sampling Rate
Scale Tree to Unit-Length