Estimate Sampling Rate from Sampling Horizon Data (Solow and Smith, 1997)
Three Rate Calibrated Timescaling of Paleo-Phylogenies
Calculates Values for Foote's Inverse Survivorship Analyses
Paint Tree Branch Depth by Color
Simulate Cladogenetic Trait Evolution
Extrapolating Lower-Level Taxon Phylogenies from Higher-Level Taxon Trees
Diversity Curves
Converting Sampling Estimates
Inverse Survivorship Models in the Fossil Record
Convert Simulated Taxon Data into a Cladogram
Calculating Diversity Curves Across Multiple Datasets
Reverse List Structure
Resolve Polytomies by Order of First Appearance
Simulating Taxa in the Fossil Record, Conditioned on Sampling Rate
Modify or Drop Terminal Branches of Various Types
Scale Tree to Unit-Length
Models of Sampling and Extinction for Taxonomic Duration Datasets
Simulate a Set of Parsimony-Informative Characters for a Phylogeny
Simulating Un-Conditioned Trees of Fossil Taxa
Convert Simulated Taxon Data into a Phylogeny
Plot a Traitgram for Continuous Traits
Joint Probability of A Clade Surviving Infinitely or Being Sampled Once
Cladogram and Range Data for the Retiolitinae
Fit Models of Sampling Rates to Continuous-Time Taxon Ranges
Randomly Collapse a Portion of Nodes on a Phylogeny
Simulating Extinct Clades of Monophyletic Taxa
Partitions the branch lengths of a tree into several classes based on their placement.
paleotree: Paleontological and Phylogenetic Analyses of Evolution
Constrain Parameters for a Model Function from paleotree
Model Function Methods: Parameter Names, Bounds and Initial Values
Simulating Taxa in the Fossil Record
Comparing the Time-Scaling of Trees
Sampling Taxon Ranges
Timescaling of Paleo-Phylogenies
Simplified Optimizer for paleotree Likelihood Functions
Bin Simulated Temporal Ranges in Discrete Intervals
Absolute Dates for Nodes of a Time-Scaled Phylogeny
perCapitaRates
Time-Slicing a Phylogeny
Fit Models of Sampling Probability to Discrete-Interval Taxon Ranges
Frequency Ratio Method for Estimating Sampling Probability
Split Tip Taxa by Root Divergence
Construct a Stochastic Sequenced Time-List from an Unsequenced Time-List
Probability of being a sampled ancestor of another sampled taxon