palmid (version 0.0.3)

get.sraGeo: get.sraGeo

Description

Retrieve the geo_coordinates for a set of SRA 'run_id'

Usage

get.sraGeo(run_ids = NULL, biosample_ids = NULL, con, ordinal = FALSE)

Arguments

run_ids

character, SRA 'run_id'

biosample_ids

character, BioSample 'biosample_id'

con

pq-connection, use SerratusConnect()

ordinal

boolean, return 'run_ids' ordered vector [F]

Value

data.frame, lon and lat numeric vectors

Examples

# NOT RUN {
con <- SerratusConnect()
palm.geo   <- get.sraGeo(run_ids = "SRR9968562", con = con)
# }