Extract cumulative coefficients (cumulative hazard differences)
A formula special used to handle cumulative effect specifications
Calculate CIF for one cause
Time-dependent covariates of the patient
data set.
Create matrix components for cumulative effects
Extract variables from the left-hand-side of a formula
Calculate difference in cumulative hazards and respective standard errors
dplyr
Verbs for ped
-Objects
Step ribbon plots.
(Cumulative) (Step-) Hazard Plots.
Information on intervals in which times fall
Exctract event types
Calculate predicted hazard
Expand time-dependent covariates to functionals
Calculate (or plot) cumulative effect for all time-points of the follow-up
Calculate cumulative hazard
Construct or extract data that represents a lag-lead window
Plot Lag-Lead windows
Forrest plot of fixed coefficients
Calculate simulation based confidence intervals
Calculate survival probabilities
Visualize effect estimates for specific covariate combinations
Plot 1D (smooth) effects
Plot smooth 1d terms of gam objects
Plot Normal QQ plots for random effects
Obtain interval break points
Extract the partial effects of non-linear model terms
Extract partial effects for specified model terms
Simulate survival times from the piece-wise exponential distribution
Create start/end times and interval information
Calculate the modus
Construct a data frame suitable for prediction
pammtools: Piece-wise exponential Additive Mixed Modeling tools.
Extract variables from the left-hand-side of a formula
Extract variables from the left-hand-side of a formula
Draw random numbers from piece-wise exponential distribution.
Simulate data for competing risks scenario
Extract interval information and median/modus values for covariates
Extract plot information for all special model terms
Plot tensor product effects
Fit a piece-wise exponential additive model
Extract information of the sample contained in a data set
Extract information on concurrent effects
Create nested data frame from data with time-dependent covariates
Extract 2d smooth objects in tidy format.
Generate a sequence over the range of a vector
Checks if data contains timd-dependent covariates
Simulated data with cumulative effects
Extract fixed coefficient table from model object
Extract variables from the left-hand-side of a formula
Survival data of critically ill ICU patients
Time until staphylococcus aureaus infection in children, with possible recurrence
warn_about_new_time_points
Warn if new t_j are used
Stomach area tumor data
Extract 1d smooth objects in tidy data format.
Extract random effects in tidy data format.
Pipe operator
Formula specials for defining time-dependent covariates
Split data to obtain recurrent event data in PED format
S3 method for pamm objects for compatibility with package pec
Function to transform data without time-dependent covariates into piece-wise
exponential data format
Transform data to Piece-wise Exponential Data (PED)
Add cumulative incidence function to data
Embeds the data set with the specified (relative) term contribution
Add survival probability estimates
Add time-dependent covariate to a data set
Add predicted (cumulative) hazard to data set
Transform crps object to data.frame
Calculate confidence intervals
Competing risks trafo
Create a data frame from all combinations of data frames