pamr.plotfdr

0th

Percentile

A function to plot the FDR curve from the nearest shrunken centroid classifier

A function to plot the FDR curve the nearest shrunken centroid classifier

Usage
pamr.plotfdr(fdrfit,  call.win.metafile = FALSE)
Arguments
fdrfit

The result of a call to pamr.fdr

call.win.metafile

Used by Excel interface

Details

pamr.plotfdr plots the FDR curves from nearest shrunken centroid classifier. The median FDR (solid line) and upper 90 percentile (broken line) are shown

Aliases
  • pamr.plotfdr
Examples
# NOT RUN {
suppressWarnings(RNGversion("3.5.0"))
set.seed(120)
x <- matrix(rnorm(1000*20),ncol=20)
y <- sample(c(1:2),size=20,replace=TRUE)
x[1:50,y==2]=x[1:50,y==2]+3
mydata <- list(x=x,y=y)
mytrain <-   pamr.train(mydata)
myfdr <-  pamr.fdr(mytrain, mydata)
pamr.plotfdr(myfdr)
# }
Documentation reproduced from package pamr, version 1.56.1, License: GPL-2

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