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pandaR (version 1.4.2)
PANDA Algorithm
Description
Runs PANDA, an algorithm for discovering novel network structure by combining information from multiple complementary data sources.
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Version
Version
1.4.2
1.4.0
1.2.0
1.0.0
Version
1.4.2
License
GPL-2
Maintainer
Joseph N Paulson
Last Published
February 15th, 2017
Functions in pandaR (1.4.2)
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testMotif
Check motif
pandaR
pandaR: Passing Messages between Biological Networks to Refine Predicted Interactions.
plotGraph
Plot graph
plot.panda
Plot.panda
print.panda
print.panda
pandaToyData
Toy gene expression, motif, and ppi data
summary.panda
Summary.panda
plotCommunityDetection
Community detection plot
calcDegreeDifference
Calculate difference in degrees
targetedGenes
targetedGenes
topedges
Top edges
pandaResult
Analysis result from PANDA algorithm on toy data
multiplot
Multiple plots
importPandaMatlab
Panda Matlab importer
plotZbyTF
Plot Z by TF out-degree quantiles
calcDegree
Calculate regulatory network degree
subnetwork
Subnetwork
pandaResultPairs
Analysis result from PANDA algorithm on toy data converted into pairs
plotZ
Comparison of Z scores between two PANDA runs
panda
Passing Messages between Biological Networks to Refine Predicted Interactions