pandemonium (version 0.2.4)

plotDimRed: Plot dimension reduction plot

Description

Plot dimension reduction plot

Usage

plotDimRed(
  coord1,
  coord2,
  d_mat1,
  d_mat2,
  data,
  colouring,
  dimReduction,
  algorithm,
  group,
  score,
  user_group,
  pch,
  seed = NULL
)

Value

plotly plot

Arguments

coord1

coordinates in space 1

coord2

coordinates in space 2

d_mat1

distance matrix in space 1

d_mat2

distance matrix in space 2

data

either "space1" or "space2"

colouring

either "clustering", "user", "bins" or "score"

dimReduction

function to calculate dimension reduction with $Y being the new n x 2 matrix

algorithm

name for algorithm used for labeling plot

group

grouping of points from clustering

score

score values and bins

user_group

user defined grouping

pch

factor with 2 levels 1 will be plotted as a circle 2 will be plotted as an o

seed

sets the seed