umap

Computes non-linear dimension reduction with uwot and default parameters.

A 'shiny' GUI that performs high dimensional cluster analysis.
This tool performs data preparation, clustering and visualisation within a dynamic GUI.
With interactive methods allowing the user to change settings all without having to to leave the GUI.
An earlier version of this package was described in Laa and Valencia (2022) <doi:10.1140/epjp/s13360-021-02310-1>.

Gabriel McCoy

pandemonium

High Dimensional Analysis in Linked Spaces

Ursula Laa

German Valencia

umap function

<dl><dt>dist</dt>
<dd>a distance matrix</dd>
<dt>...</dt>
<dd>other parameters expected to be passed to dimReduction</dd></dl>

Arguments

Uniform Manifold Approximation and Projection Embedding — umap

<dl>

<dt>dist</dt>
<dd>a distance matrix</dd>


<dt>...</dt>
<dd>other parameters expected to be passed to dimReduction</dd>

</dl>

umap: Uniform Manifold Approximation and Projection Embedding

Description

Usage

Value

Arguments

Examples