pandemonium (version 0.2.4)

writeResults: Write coordinates and cluster assignment to a CSV file

Description

For working with the results outside the app. Settings used: metric, linkage, k

Usage

writeResults(
  space1,
  cov = NULL,
  covInv = NULL,
  exp = NULL,
  space2,
  space2.cov = NULL,
  space2.covInv = NULL,
  space2.exp = NULL,
  settings,
  filename,
  user_dist = NULL,
  getCoords.space1 = normCoords,
  getCoords.space2 = rawCoords
)

Value

No return value, called for writing file

Arguments

space1

cluster space matrix

cov

covariance matrix

covInv

inverse covariance matrix

exp

observable reference value (e.g. experimental measurement)

space2

space2 matrix

space2.cov

covariance matrix

space2.covInv

inverse covariance matrix

space2.exp

observable reference value (e.g. experimental measurement)

settings

list specifying parameters usually selected in the app

filename

path to write the results file to

user_dist

input distance matrix (optional)

getCoords.space1

function to calculate coordinates on clustering space

getCoords.space2

function to calculate coordinates on linked space

Examples

file<-tempfile()
writeResults(space1 = Bikes$space1, space2 = Bikes$space2,
settings = list(metric="euclidean",linkage="ward.D2",k=4), filename = file)
file.remove(file)