A panel model for dynamic variation in sexual contacts, with data from Vittinghof et al (1999). The model was developed by Romero-Severson et al (2015) and discussed by Bretó et al (2020).
contacts(
params = c(mu_X = 1.75, sigma_X = 2.67, mu_D = 3.81, sigma_D = 4.42, mu_R = 0.04,
sigma_R = 0, alpha = 0.9)
)A panelPomp object.
parameter vector.
Edward L. Ionides
Bretó, C., Ionides, E. L. and King, A. A. (2020) Panel Data Analysis via Mechanistic Models. Journal of the American Statistical Association, 115(531), 1178--1188. tools:::Rd_expr_doi("https://doi.org/10.1080/01621459.2019.1604367")
Romero-Severson, E.O., Volz, E., Koopman, J.S., Leitner, T. and Ionides, E.L. (2015) Dynamic variation in sexual contact rates in a cohort of HIV-negative gay men. American journal of epidemiology, 182(3), 255--262. tools:::Rd_expr_doi("http://doi.org/10.1093/aje/kwv044")
Vitinghoff, E., Douglas, J., Judon, F., McKiman, D., MacQueen, K. and Buchinder, S.P. (1999) Per-contact risk of human immunodificiency virus tramnsmision between male sexual partners. American journal of epidemiology, 150(3), 306--311. tools:::Rd_expr_doi("https://doi.org/10.1093/oxfordjournals.aje.a010003")
Other panelPomp examples:
panelGompertz(),
panelMeasles(),
panelRandomWalk()