NSMPnames.hgu133plus2


	This list of NSMP probeset names is used by pa.calls() 
	in calculating the NSMP expression distribution. It is
	specific to the chip type; the correct version is 
	automatically loaded for the detected chip type, if
	supported. The user does not load or use this
	data directly. 


datasets

A function to make gene presence/absence calls based
on distance from negative strand matching probesets (NSMP)
which are derived from Affymetrix annotation. PANP is applied
after gene expression values are created, and therefore can be
used after any preprocessing method such as MAS5 or GCRMA, or
PM-only methods like RMA. NSMP sets have been established for
the HGU133A and HGU133-Plus-2.0 chipsets to date.

Peter Warren

panp

Presence-Absence Calls from Negative Strand Matching Probesets

NSMPnames.hgu133plus2 function

Format

October 2004 AffyMetrix chip annotation files, filtered, with outliers removed

Source

This list of NSMP probeset names is used by pa.calls() 
	in calculating the NSMP expression distribution. It is
	specific to the chip type; the correct version is 
	automatically loaded for the detected chip type, if
	supported. The user does not load or use this
	data directly.

NSMPnames.hgu133plus2: Negative Strand Matching Probeset (NSMP) names for HG-U133 Plus 2.0 chip type

Description

Usage

Arguments

Format

Source