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paramlink (version 0.2-1)

Parametric linkage analysis

Description

Parametric pedigree analysis based on the Elston-Stewart algorithm. Singlepoint LOD scores and power analysis for diallelic markers. Also includes functions for manipulating and plotting pedigrees and linkage results.

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Version

Install

install.packages('paramlink')

Monthly Downloads

293

Version

0.2-1

License

GPL (>= 2)

Maintainer

Magnus Dehli Vigeland

Last Published

March 20th, 2011

Functions in paramlink (0.2-1)

modifyPedigree

Modify 'linkdat' objects
lod

Two-point LOD score
likelihood

Pedigree likelihood
Xped

Example pedigree with X-linked disease pattern.
simulSNP

Simulate SNP markers
plot.linkdat

Plot pedigrees with genotypes
markers

Marker genotypes for linkdat objects
linkres

S3 methods for class 'linkres'.
genoDistr

Genotype probability distribution
randomPed

Random pedigree
linkdat.utils

linkdat utilities
read.linkdat

Read/write 'linkdat' objects
linkage.power

Power of a linkage study
setModel

Set, change or display the model parameters for 'linkdat' objects
nuclearPed

Create nuclear families or n-degree cousin pedigrees
toyped

Toy pedigree for linkage analysis
largefam

Example pedigree for linkage analysis: 23 individuals, 650 SNPs
linkdat

linkdat objects