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parseRPDR (version 0.2.3)

data_dem: Example of processed dem.txt output from RPDR using the load_dem() function.

Description

Result of a dem.txt output from RPDR loaded into a data table in R using load_dem().

**NOTE**: Due to potential issues with PHI and PPI, the example datasets can be downloaded from the Partners Gitlab repository under *parserpdr-sample-data*.

Usage

data_dem

Arguments

Value

data table, with demographic information data.

ID_MERGE

numeric, defined IDs by merge_id, used for merging later.

ID_dem_EMPI

string, Unique Partners-wide identifier assigned to the patient used to consolidate patient information. from dem datasource, corresponds to EMPI in RPDR. Data is formatted using pretty_mrn().

ID_dem_PMRN

string, Epic medical record number. This value is unique across Epic instances within the Partners network. from dem datasource, corresponds to EPIC_PMRN in RPDR. Data is formatted using pretty_mrn().

ID_dem_loc

string, if mrn_type == TRUE, then the data in MRN_Type and MRN are parsed into IDs corresponding to locations. Data is formatted using pretty_mrn().

gender

string, Patient's legal sex, corresponds to Gender in RPDR. Punctuation marks and white spaces are removed.

time_date_of_birth

POSIXct, Patient's date of birth, corresponds to Date_of_Birth in RPDR. Converted to POSIXct format.

age

string, Patient's current age (or age at death), corresponds to Age in RPDR.

language

string, Patient's preferred spoken language, corresponds to Language in RPDR. Punctuation marks and white spaces are removed.

race

string, Patient's primary race, corresponds to Race in RPDR. Punctuation marks and white spaces are removed.

marital

string, Patient's current marital status, corresponds to Marital_Status in RPDR. Punctuation marks and white spaces are removed.

religion

string, Patient-identified religious preference, corresponds to Religion in RPDR. Punctuation marks and white spaces are removed.

veteran

string, Patient's current military veteran status, corresponds to Is_a_veteran in RPDR. Punctuation marks and white spaces are removed.

country_dem

string, Patient's current country of residence from dem datasource, corresponds to Country in RPDR. Punctuation marks and white spaces are removed.

zip_dem

string, Mailing zip code of patient's primary residence from dem datasource, corresponds to Zip_code in RPDR.Formatted to 5 character zip codes.

vital_status

string, Identifies if the patient is living or deceased. This data is updated monthly from the Partners registration system and the Social Security Death Master Index, corresponds to Vital_Status in RPDR. Punctuation marks are removed.

time_date_of_death

POSIXct, Recorded date of death from source in 'Vital_Status'. Date of death information obtained solely from the Social Security Death Index will not be reported until 3 years after death due to privacy concerns. If the value is independently documented by a Partners entity within the 3 year window then the date will be displayed. corresponds to Date_of_Death in RPDR. Converted to POSIXct format.

Format

data.table