A lab.txt output from RPDR loaded into a data table in R using data.table::fread().
**NOTE**: Due to potential issues with PHI and PPI, the example datasets can be downloaded from the Partners Gitlab repository under *parserpdr-sample-data*.
data_lab_rawdata table, imported from lab.txt
numeric, Unique Partners-wide identifier assigned to the patient used to consolidate patient information.
numeric, Epic medical record number. This value is unique across Epic instances within the Partners network.
string, Indicates the institution associated with a specific MRN. This can appear as a comma-delimited list if MRNs from multiple Partners Health System institutions are available.
string, Unique Medical Record Number for the site identified in the 'MRN_Type' field. This can appear as a comma-delimited list if multiple MRNs from Partners hospitals are available.
string, Date when the specimen was collected.
string, Higher-level grouping concept used to consolidate similar tests across hospitals.
string, Standardized LOINC code for the laboratory test.
string, Internal identifier for the test used by the source system.
string, Name of the lab test.
string, Result value for the test.
string, Additional information included with the result. This can include instructions for interpretation or comments from the laboratory.
string, Flag for identifying if values are outside of normal ranges or represent a significant deviation from previous values.
numeric, Units associated with the result value.
string, Normal or therapeutic range for this value.
string, Reference range of values defined as being toxic to the patient.
string, Type of specimen collected to perform the test.
string, Free-text information about the specimen, its collection or its integrity.
string, Free-text information about any changes made to the results.
string, Flag which indicates whether the procedure is pending or complete.
string, Name of the ordering physician.
string, Internal tracking number assigned to the specimen for identification in the lab.
string, Database source, either CDR (Clinical Data Repository) or RPDR (internal RPDR database).
data.table