all_ids_mi2b2

Gathers all possible IDs from different input sources to provide a vector of all possible MGH or BWH IDs to be used as a data request for mi2b2 workbench.
mi2b2 workbench only works with MGH or BWH IDs, therefore curated IDs, such as PMRN cannot be used. However, as MGH and BWH IDs may change over time,
to access all possible images for given patients, a full list of all IDs over time for each patient is needed. For this all possible IDs need to gathered and returned.

Functions to load Research Patient Data Registry ('RPDR') text queries from Partners Healthcare institutions into R.
The package also provides helper functions to manipulate data and execute common procedures
such as finding the closest radiological exams considering a given timepoint, or creating a DICOM header database
from the downloaded images. 'parseRPDR' currently supports txt sources: "mrn", "con", "dem", "enc", "rdt", "lab",
"med", "dia", "rfv", "prc", "phy", "lno", "car", "dis", "end", "hnp", "opn", "pat", "prg", "pul", "rad" and "vis".
All functionalities are parallelized for fast and efficient analyses.

Marton Kolossvary

parseRPDR

Parse and Manipulate Research Patient Data Registry ('RPDR')
Text Queries

all_ids_mi2b2 function

<dl><dt>type</dt>
<dd>string, either "MGH" or "BWH" specifying which IDs to use.</dd>
<dt>d_mrn</dt>
<dd>data.table, parsed mrn dataset using the load_mrn function.</dd>
<dt>d_con</dt>
<dd>data.table, parsed con dataset using the load_con function.</dd></dl>

Arguments

Creates a vector of all possible IDs for mi2b2 workbench — all_ids_mi2b2

<dl>

<dt>type</dt>
<dd>string, either "MGH" or "BWH" specifying which IDs to use.</dd>


<dt>d_mrn</dt>
<dd>data.table, parsed mrn dataset using the load_mrn function.</dd>


<dt>d_con</dt>
<dd>data.table, parsed con dataset using the load_con function.</dd>

</dl>

all_ids_mi2b2: Creates a vector of all possible IDs for mi2b2 workbench

Description

Usage

Value

Arguments

Examples