all_ids_mi2b2

Legacy function to gather all possible MGH and BWH IDs from mrn.txt and con.txt input sources to provide a vector of all possible MGH or BWH IDs to be used as a data request for mi2b2 workbench.

Functions to load Research Patient Data Registry ('RPDR') text queries from Partners Healthcare institutions into R.
The package also provides helper functions to manipulate data and execute common procedures
such as finding the closest radiological exams considering a given timepoint, or creating a DICOM header database
from the downloaded images. All functionalities are parallelized for fast and efficient analyses.

Marton Kolossvary

parseRPDR

Parse and Manipulate Research Patient Data Registry ('RPDR')
Text Queries

all_ids_mi2b2 function

<dl><dt>type</dt>
<dd>string, either "MGH" or "BWH" specifying which IDs to use.</dd>
<dt>d_mrn</dt>
<dd>data.table, parsed mrn dataset using the load_mrn function.</dd>
<dt>d_con</dt>
<dd>data.table, parsed con dataset using the load_con function.</dd></dl>

Arguments

Legacy function to create a vector of all possible IDs for mi2b2 workbench — all_ids_mi2b2

<dl>

<dt>type</dt>
<dd>string, either "MGH" or "BWH" specifying which IDs to use.</dd>


<dt>d_mrn</dt>
<dd>data.table, parsed mrn dataset using the load_mrn function.</dd>


<dt>d_con</dt>
<dd>data.table, parsed con dataset using the load_con function.</dd>

</dl>

all_ids_mi2b2: Legacy function to create a vector of all possible IDs for mi2b2 workbench

Description

Usage

Value

Arguments

Examples