pathClass (version 0.9.1)

read.hprd: Parse the HPRD flat file...

Description

Parse the HPRD flat file

Usage

read.hprd(fname, chipProteins)

Arguments

fname
path to the HPRD flat file.
chipProteins
limit the resulting adjacency matrix to certain proteins.

Value

  • An adjacency matrix

Details

This function parses the tab delimited flat file of protein-protein interactions coming from the HPRD (http://www.hprd.org/download).

Examples

Run this code
hprd <- read.hprd('BINARY_PROTEIN_PROTEIN_INTERACTIONS.txt')

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