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pathRender (version 1.34.0)

Render molecular pathways

Description

build graphs from pathway databases, render them by Rgraphviz

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Version

Version

1.34.0

License

LGPL

Maintainer

Li Long

Last Published

February 15th, 2017

Functions in pathRender (1.34.0)

rendercMAPPathway

Render pathways from cMAP
colorNodes

attach node coloring information to a graphNEL instance
coloredGraph-class

Class "coloredGraph"
graphcMAP

obtain a graph object corresponding to a cMAP pathway
pwayGraph-class

Class "pwayGraph" -- extension to graphNEL for pathway rendering
reduceES

collapse the assay values in an ExpressionSet to a set of specified genes, using a statistic when multiple probes map to a given gene
plotExGraph

plot a gene network, coloring nodes according to relative expression values