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pathRender (version 1.36.0)

Render molecular pathways

Description

build graphs from pathway databases, render them by Rgraphviz.

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Version

Version

1.36.0

License

LGPL

Maintainer

Vince Carey

Last Published

February 15th, 2017

Functions in pathRender (1.36.0)

graphcMAP

obtain a graph object corresponding to a cMAP pathway
plotExGraph

plot a gene network, coloring nodes according to relative expression values
rendercMAPPathway

Render pathways from cMAP
coloredGraph-class

Class "coloredGraph"
pwayGraph-class

Class "pwayGraph" -- extension to graphNEL for pathway rendering
colorNodes

attach node coloring information to a graphNEL instance
reduceES

collapse the assay values in an ExpressionSet to a set of specified genes, using a statistic when multiple probes map to a given gene