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pathRender (version 1.36.0)
Render molecular pathways
Description
build graphs from pathway databases, render them by Rgraphviz.
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1.40.0
1.38.0
1.36.0
1.34.0
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Version
1.36.0
License
LGPL
Maintainer
Vince Carey
Last Published
January 1st, 1970
Functions in pathRender (1.36.0)
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graphcMAP
obtain a graph object corresponding to a cMAP pathway
plotExGraph
plot a gene network, coloring nodes according to relative expression values
rendercMAPPathway
Render pathways from cMAP
coloredGraph-class
Class "coloredGraph"
pwayGraph-class
Class "pwayGraph" -- extension to graphNEL for pathway rendering
colorNodes
attach node coloring information to a graphNEL instance
reduceES
collapse the assay values in an ExpressionSet to a set of specified genes, using a statistic when multiple probes map to a given gene