pathVar (version 1.2.0)

diagnosticsVarPlots: Plots the average expression against variability using different summary statistics.

Description

Plots the average expression against variability using different summary statistics to help decide which statistic would be the best with your dataset.

Usage

diagnosticsVarPlots(dat.mat)

Arguments

dat.mat
a matrix with rows as genes and columns as samples.

Value

3 scatter plots where average expression is on the X-axis and SD, MAD, and CV are on the Y-axis.

Details

This function gives you 3 plots one for SD, one for MAD and one for CV against the mean to help you decide which one would be the best with your dataset. It also returns the correlation between each variability statistics and the mean.

Examples

Run this code
diagnosticsVarPlots(bock)

Run the code above in your browser using DataCamp Workspace