pathVar (version 1.2.0)

plotPway: Checks if an object is from the one sample or two samples cases and then plots reference distribution and the chosen pathway.

Description

Checks if an object is from the one sample or two samples cases and then plots reference distribution and the chosen pathway.

Usage

plotPway(pvalue_results,pathway,sig)

Arguments

pvalue_results

output of pathVarTwoSamples or pathVarOneSample step.

pathway

the chosen pathway you want to plot.

sig

output of sigPway or NULL.

Value

A plot of the results from sigPway.

Details

Plots the results of the one or two samples case for a chosen pathway.

Examples

# we run the 2 samples analysis on the first 10 pathways from kegg
pways.kegg.10pways <- lapply(pways.kegg, function(x) x[1:10])
results_2samples=pathVarTwoSamplesCont(bock,pways.kegg.10pways,groups=as.factor(c(rep(1,10),rep(2,10))))
sigPways <- sigPway(results_2samples,0.05)
plotPway(results_2samples,"Glycolysis / Gluconeogenesis",sigPways)