sigPway:
A function checks if an object is from the one sample or two samples cases and then finds the significant pathways.
Description
A function checks if an object is from the one sample or two samples cases and then finds the significant pathways.
Usage
sigPway(pvalue_results, pvalue)
Arguments
pvalue_results
geneDistributionSet2 object and the output of the pathVarTwoSamples function or geneDistributionSet object and the output of the pathVarOneSample.
pvalue
the significance level to test.
Value
A significantPathway2 object or significantPathway object is returned.
Details
This function takes the output pathVarTwoSamples or pathVarOneSample and returns a significantPathway2 or significantPathway object specifying
the significant pathway(s) and which gene(s) belongs to the significant pathway(s).