kegg_pathways

<p>A list containing the descriptions for each human KEGG pathway. Names of the
list correspond to the KEGG ID of the pathway. Pathways that did not contain
any genes were discarded. This data was retrieved on Nov 9, 2018.</p>

datasets

Pathway enrichment analysis enables researchers to uncover mechanisms
underlying the phenotype. pathfindR is a tool for pathway enrichment analysis
utilizing active subnetworks. It identifies active subnetworks in a
protein-protein interaction network using user-provided a list of genes.
It performs pathway enrichment analyses on the identified subnetworks.
pathfindR also offers functionalities to cluster enriched pathways and identify
representative pathways and to score the pathways per sample. The method is
described in detail in Ulgen E, Ozisik O, Sezerman OU. 2018. pathfindR: An R
Package for Pathway Enrichment Analysis Utilizing Active Subnetworks. bioRxiv.
<doi:10.1101/272450>.

Ege Ulgen

pathfindR

Pathway Enrichment Analysis Utilizing Active Subnetworks

kegg_pathways function

<p>vector containing 321 character values, the descriptions for the given
  pathways.</p>

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kegg_pathways: KEGG Pathway Descriptions

Description

Usage

Arguments

Format