clean_by_span

Remove file_sub_traj entries that do not span the full region of interest

Tools to import, clean, and visualize movement data,
particularly from motion capture systems such as Optitrack's
'Motive', the Straw Lab's 'Flydra', or from other sources. We provide
functions to remove artifacts, standardize tunnel position and tunnel
axes, select a region of interest, isolate specific trajectories, fill
gaps in trajectory data, and calculate 3D and per-axis velocity. For
experiments of visual guidance, we also provide functions that use
subject position to estimate perception of visual stimuli.

Vikram B. Baliga

pathviewr

Wrangle, Analyze, and Visualize Animal Movement Data

clean_by_span function

<dl><dt>obj_name</dt>
<dd>The input viewr object; a tibble or data.frame with attribute
<code>pathviewr_steps</code> that includes <code>"viewr"</code></dd>
<dt>axis</dt>
<dd>Along which axis should restrictions be enforced?</dd>
<dt>min_value</dt>
<dd>Minimum coordinate value; setting this to NULL will
auto-compute the best value</dd>
<dt>max_value</dt>
<dd>Maximum coordinate; setting this to NULL will auto-compute
the best value</dd>
<dt>tolerance</dt>
<dd>As a proporiton of axis value</dd></dl>

Arguments

Author

Remove file_sub_traj entries that do not span the full region of interest — clean_by_span

<dl>

<dt>obj_name</dt>
<dd>The input viewr object; a tibble or data.frame with attribute
<code>pathviewr_steps</code> that includes <code>"viewr"</code></dd>


<dt>axis</dt>
<dd>Along which axis should restrictions be enforced?</dd>


<dt>min_value</dt>
<dd>Minimum coordinate value; setting this to NULL will
auto-compute the best value</dd>


<dt>max_value</dt>
<dd>Maximum coordinate; setting this to NULL will auto-compute
the best value</dd>


<dt>tolerance</dt>
<dd>As a proporiton of axis value</dd>

</dl>

clean_by_span: Remove file_sub_traj entries that do not span the full region of interest

Description

Usage

Value

Arguments

Author

See Also