getShapePalettePatientProfile

This is a simple wrapper around 
getShapePalette,
with different defaults:<ul>
<li>inclusion of missing values by
default (<code>includeNA</code> set to <code>TRUE</code>)</li>
<li>the extraction of shapes as text
by default (<code>asText</code> set to <code>TRUE</code>)</li>
</ul>

Creation of patient profile visualizations for
exploration, diagnostic or monitoring purposes during a clinical trial.
These static visualizations display a patient-specific overview
of the evolution during the trial time frame of
parameters of interest (as laboratory, ECG, vital signs),
presence of adverse events, exposure to a treatment;
associated with metadata patient information,
as demography, concomitant medication.
The visualizations can be tailored for specific domain(s) or endpoint(s) of interest.
Visualizations are exported into patient profile report(s)
or can be embedded in custom report(s).

Laure Cougnaud

patientProfilesVis

Visualization of Patient Profiles

Margaux Faes

Open Analytics 

getShapePalettePatientProfile function

<dl><dt>...</dt>
<dd>Arguments passed on to <code>clinUtils::getShapePalette</code><dl>
 <dt><code>n</code></dt>
<dd>Integer of length 1, number of elements in palette.</dd></dl></dd> <dt><code>x</code></dt>
<dd>Vector with elements used for palette.
If factor, the levels are used, otherwise the unique elements of the vector.
Missing values are automatically removed, excepted if
<code>includeNA</code> is set to TRUE.</dd> <dt><code>palette</code></dt>
<dd>A vector of custom shapes,
or a function returning this vector from a specific
number of shapes. 
The vector should be a character if <code>asText</code> is set to TRUE. 
Default is the <code>clinShapes</code> shape palette,
or <code>clinShapesText</code> if <code>asText</code> is set to TRUE.</dd> 
</dl>
<dt>includeNA</dt>
<dd>Logical (TRUE by default), 
should NA elements be retained in the palette in case
<code>x</code> is specified?</dd>
<dt>asText</dt>
<dd>Logical (TRUE by default), should the palette
be expressed as integer (base R plot and ggplot2 compatible)
or in text format 
(e.g. required if combined with unicode symbols in ggplot2)?</dd>

Arguments

Author

Get a shape palette for patient profile
visualizations. — getShapePalettePatientProfile

<dl>

<dt>...</dt>
<dd>Arguments passed on to <code>clinUtils::getShapePalette</code><dl>
 <dt><code>n</code></dt>
<dd>Integer of length 1, number of elements in palette.</dd>

 <dt><code>x</code></dt>
<dd>Vector with elements used for palette.
If factor, the levels are used, otherwise the unique elements of the vector.
Missing values are automatically removed, excepted if
<code>includeNA</code> is set to TRUE.</dd>

 <dt><code>palette</code></dt>
<dd>A vector of custom shapes,
or a function returning this vector from a specific
number of shapes. 
The vector should be a character if <code>asText</code> is set to TRUE. 
Default is the <code>clinShapes</code> shape palette,
or <code>clinShapesText</code> if <code>asText</code> is set to TRUE.</dd>

 
</dl></dd>


<dt>includeNA</dt>
<dd>Logical (TRUE by default), 
should NA elements be retained in the palette in case
<code>x</code> is specified?</dd>


<dt>asText</dt>
<dd>Logical (TRUE by default), should the palette
be expressed as integer (base R plot and ggplot2 compatible)
or in text format 
(e.g. required if combined with unicode symbols in ggplot2)?</dd>

</dl>

getShapePalettePatientProfile: Get a shape palette for patient profile visualizations.

Description

Usage

Value

Arguments

Author

See Also