subjectProfileExport

Creation of patient profile visualizations for
exploration, diagnostic or monitoring purposes during a clinical trial.
These static visualizations display a patient-specific overview
of the evolution during the trial time frame of
parameters of interest (as laboratory, ECG, vital signs),
presence of adverse events, exposure to a treatment;
associated with metadata patient information,
as demography, concomitant medication.
The visualizations can be tailored for specific domain(s) or endpoint(s) of interest.
Visualizations are exported into patient profile report(s)
or can be embedded in custom report(s).

Laure Cougnaud

patientProfilesVis

Visualization of Patient Profiles

Margaux Faes

Open Analytics 

subjectProfileExport function

<dl><dt>listPlotsSubject</dt>
<dd>List of plots for each subject</dd>
<dt>outputFile</dt>
<dd>string, path to the output report</dd>
<dt>index</dt>
<dd>Index, output from <code>defineIndex</code></dd>
<dt>formatReport</dt>
<dd>list with parameters used to specify the format of the report,
e.g. output of the <code>subjectProfileReportFormat</code> function</dd>
<dt>shiny</dt>
<dd>logical, set to TRUE (FALSE by default) 
if the report is generated from a Shiny application.
Messages during report creation will be included in the Shiny interface,
and it will be mentioned at the end of the report.
In this case, the <code>shiny</code> package should be available.</dd>
<dt>verbose</dt>
<dd>logical, if TRUE print messages during execution</dd>
<dt>nCores</dt>
<dd>Integer containing the number of cores used for the computation
(1 by default). If more than 1, computation is parallelized, in this case
the package <code>parallel</code> is required.</dd>
<dt>exportFigures</dt>
<dd>Logical, if TRUE (FALSE by default) the 
subject profile figures are also exported
in pdf format in a 'figures' folder. 
Figures are named as <code>[subjectID]-[page].pdf</code></dd></dl>

Arguments

Author

Create report — subjectProfileExport

<dl>

<dt>listPlotsSubject</dt>
<dd>List of plots for each subject</dd>


<dt>outputFile</dt>
<dd>string, path to the output report</dd>


<dt>index</dt>
<dd>Index, output from <code>defineIndex</code></dd>


<dt>formatReport</dt>
<dd>list with parameters used to specify the format of the report,
e.g. output of the <code>subjectProfileReportFormat</code> function</dd>


<dt>shiny</dt>
<dd>logical, set to TRUE (FALSE by default) 
if the report is generated from a Shiny application.
Messages during report creation will be included in the Shiny interface,
and it will be mentioned at the end of the report.
In this case, the <code>shiny</code> package should be available.</dd>


<dt>verbose</dt>
<dd>logical, if TRUE print messages during execution</dd>


<dt>nCores</dt>
<dd>Integer containing the number of cores used for the computation
(1 by default). If more than 1, computation is parallelized, in this case
the package <code>parallel</code> is required.</dd>


<dt>exportFigures</dt>
<dd>Logical, if TRUE (FALSE by default) the 
subject profile figures are also exported
in pdf format in a 'figures' folder. 
Figures are named as <code>[subjectID]-[page].pdf</code></dd>

</dl>

subjectProfileExport: Create report

Description

Usage

Value

Arguments

Author