kImage

<code><a href="/link/kmeans?package=patternize&version=0.0.5" data-mini-rdoc="patternize::kmeans">kmeans</a></code> clustering of image imported as a RasterStack. This function is
used by <code>patLanK</code> and <code>patRegK</code>.

Quantification of variation in organismal color patterns as
obtained from image data. Patternize defines homology between pattern positions
across images either through fixed landmarks or image registration. Pattern
identification is performed by categorizing the distribution of colors using RGB
thresholds or image segmentation.

Steven Van Belleghem

patternize

Quantification of Color Pattern Variation

kImage function

<dl><dt>image</dt>
<dd>Image imported as a RasterStack for k-means clustering.</dd>
<dt>k</dt>
<dd>Integer for number of k-means clusters (default = 3).</dd>
<dt>startCenter</dt>
<dd>A matrix of cluster centres to start k-means clustering from (default = NULL).</dd>
<dt>maskToNA</dt>
<dd>Replace the color value used for masking (i.e. 0 or 255) with NA.</dd>
<dt>kmeansOnAll</dt>
<dd>Whether to perform the kmeans clusters on the combined set of pixels of all images
first (default = FALSE).</dd></dl>

Arguments

<code><a href='https://rdrr.io/r/stats/kmeans.html'>kmeans</a></code> clustering of image imported as a RasterStack. This function is
used by <code>patLanK</code> and <code>patRegK</code>.

kmeans clustering of image imported as a RasterStack. This function is
used by patLanK and patRegK. — kImage

<dl>

<dt>image</dt>
<dd>Image imported as a RasterStack for k-means clustering.</dd>


<dt>k</dt>
<dd>Integer for number of k-means clusters (default = 3).</dd>


<dt>startCenter</dt>
<dd>A matrix of cluster centres to start k-means clustering from (default = NULL).</dd>


<dt>maskToNA</dt>
<dd>Replace the color value used for masking (i.e. 0 or 255) with NA.</dd>


<dt>kmeansOnAll</dt>
<dd>Whether to perform the kmeans clusters on the combined set of pixels of all images
first (default = FALSE).</dd>

</dl>

<code><a href='https://rdrr.io/r/stats/kmeans.html'>kmeans</a></code> clustering of image imported as a RasterStack. This function is
used by <code>patLanK</code> and <code>patRegK</code>.

<code><a href="/link/kmeans?package=patternize&version=0.0.5" data-mini-rdoc="patternize::kmeans">kmeans</a></code> clustering of image imported as a RasterStack. This function is
used by <code>patLanK</code> and <code>patRegK</code>.

kImage: `kmeans` clustering of image imported as a RasterStack. This function is used by `patLanK` and `patRegK`.

Description

Usage

Value

Arguments

Examples