setMask

Interactive function to to draw an outline for masking.

Quantification of variation in organismal color patterns as
obtained from image data. Patternize defines homology between pattern positions
across images either through fixed landmarks or image registration. Pattern
identification is performed by categorizing the distribution of colors using RGB
thresholds or image segmentation.

Steven Van Belleghem

patternize

Quantification of Color Pattern Variation

setMask function

<dl><dt>summedRaster</dt>
<dd>Summed raster of extracted patterns.</dd>
<dt>IDlist</dt>
<dd>List of sample IDs.</dd>
<dt>filename</dt>
<dd>Name of file to which mask will be written.</dd>
<dt>...</dt>
<dd>additional arguments for plotHeat function.</dd></dl>

Arguments

Interactive function to to draw an outline for masking. — setMask

<dl>

<dt>summedRaster</dt>
<dd>Summed raster of extracted patterns.</dd>


<dt>IDlist</dt>
<dd>List of sample IDs.</dd>


<dt>filename</dt>
<dd>Name of file to which mask will be written.</dd>


<dt>...</dt>
<dd>additional arguments for plotHeat function.</dd>

</dl>

setMask: Interactive function to to draw an outline for masking.

Description

Usage

Value

Arguments