pauwels2014 (version 1.0)

simulate_experiment: Simulates the dynamics of a molecular perturbation

Description

This function simulates the kinetics of the system, in accordance with a chosen molecular perturbation.

Usage

simulate_experiment(theta, knobj, experiment_fun)

Arguments

theta

A named numeric parameter vector

knobj

A knowledge list. See knobjs.

experiment_fun

An element of experiment_list1 that represents a molecular perturbation

Details

Transforms parameter values and initial conditions in order to pass it to deSolve ode solver.

See Also

transform_params, experiment_list1, simulate_experiment_no_transform

Examples

data(experiment_list1)

## Generate the knowledge object with correct parameter value
knobj <- generate_our_knowledge(transform_params)

temp <- simulate_experiment(knobj$global_parameters$true_params, 
 knobj, experiment_list1$nothing)

head(temp)