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pbatR (version 2.1.1)

cluster: Cluster result functions

Description

Options when 'clusterRefresh' has been set to 0 (so that the current process is batched). See pbat.set for details.

is.finished() returns if PBAT execution has terminated.

pbat.load() loads in PBAT output.

pbat.concatenate() concatenates output files (without reading them into an R object).

Usage

is.finished( pbatObj=NULL, clean=TRUE )
pbat.load( pbatObj=NULL )
pbat.concatenate( pbatObj=NULL, filename="myResults.txt", clean=FALSE )

Arguments

pbatObj
'pbat' object (result of pbat.m, pbat.obj, pbat.files). If NULL / left empty, then the results are taken from what was run in the GUI interface.
clean
pbat.load: If TRUE it will remove intermediate files that setup the job submission interface (but no other results, and not the command-files sent to pbat); see also pbat.clean. If FALSE, nothing else is done. NOTE, when TRUE (whic
filename
output filename

References

http://www.biostat.harvard.edu/~clange/default.htm http://www.people.fas.harvard.edu/~tjhoffm/pbatR.html

See Also

pbat.set pbat